Partial Context Similarity of Gene/Proteins in Leukemia Using Context Rank Based Hierarchical Clustering Algorithm

Shahana Bano, K.Rajasekara Rao

Abstract


In this paper we proposed a method which avoids the choice of natural language processing tools such as pos taggers and parsers reduce the processing overhead. Moreover, we suggest a structure to immediately create a large-scale corpus annotated along with disease names, which can be applied to train our probabilistic model. In this proposed work context rank based hierarchical clustering method is applied on different datasets namely colon, Leukemia, MLL medical diseases. Optimal rule filtering algorithm is applied on these datasets to remove unwanted special characters for gene/protein identification. Finally, experimental results show that proposed method outperformed existing methods in terms of time and clusters space.

Keywords


Biomedical,Machine learning ,gene/protein,clustering,medline, pubmed

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DOI: http://doi.org/10.11591/ijece.v5i3.pp483-490

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International Journal of Electrical and Computer Engineering (IJECE)
p-ISSN 2088-8708, e-ISSN 2722-2578