Design and development of learning model for compression and processing of deoxyribonucleic acid genome sequence

Raveendra Gudodagi, Rayapur Venkata Siva Reddy, Mohammed Riyaz Ahmed

Abstract


Owing to the substantial volume of human genome sequence data files (from 30-200 GB exposed) Genomic data compression has received considerable traction and storage costs are one of the major problems faced by genomics laboratories. This involves a modern technology of data compression that reduces not only the storage but also the reliability of the operation. There were few attempts to solve this problem independently of both hardware and software. A systematic analysis of associations between genes provides techniques for the recognition of operative connections among genes and their respective yields, as well as understandings into essential biological events that are most important for knowing health and disease phenotypes. This research proposes a reliable and efficient deep learning system for learning embedded projections to combine gene interactions and gene expression in prediction comparison of deep embeddings to strong baselines. In this paper we preform data processing operations and predict gene function, along with gene ontology reconstruction and predict the gene interaction. The three major steps of genomic data compression are extraction of data, storage of data, and retrieval of the data. Hence, we propose a deep learning based on computational optimization techniques which will be efficient in all the three stages of data compression.

Keywords


data compression; gene quality score; gene-interaction-networks; heterogeneous-data-processing; network-representation-learning; quality score distribution;

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DOI: http://doi.org/10.11591/ijece.v12i2.pp1786-1794

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International Journal of Electrical and Computer Engineering (IJECE)
p-ISSN 2088-8708, e-ISSN 2722-2578