An ICA-ensemble learning approaches for prediction of RNA-seq malaria vector gene expression data classification

Micheal Olaolu Arowolo, Marion O. Adebiyi, Ayodele A. Adebiyi, Olatunji J. Okesola

Abstract


Malaria parasites introduce outstanding life-phase variations as they grow across multiple atmospheres of the mosquito vector. There are transcriptomes of several thousand different parasites. (RNA-seq) Ribonucleic acid sequencing is a prevalent gene expression tool leading to better understanding of genetic interrogations. RNA-seq measures transcriptions of expressions of genes. Data from RNA-seq necessitate procedural enhancements in machine learning techniques. Researchers have suggested various approached learning for the study of biological data. This study works on ICA feature extraction algorithm to realize dormant components from a huge dimensional RNA-seq vector dataset, and estimates its classification performance, Ensemble classification algorithm is used in carrying out the experiment. This study is tested on RNA-Seq mosquito anopheles gambiae dataset. The results of the experiment obtained an output metrics with a 93.3% classification accuracy.

Keywords


ensemble classifier; ICA; malaria vector; RNA-seq;



DOI: http://doi.org/10.11591/ijece.v11i2.pp%25p
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ISSN 2088-8708, e-ISSN 2722-2578